PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005408m
Common NameCARUB_v10005408mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 289aa    MW: 31737.3 Da    PI: 6.4129
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005408mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.7e-36151062102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw+e+g++fvv+++ ef+k++Lp+yFkh+nf+SF+RQLn+YgF+k+  ++         weF++++F++g ++ll+
  Carubv10005408m  15 FLSKTYQLVDDHNTDDVVSWNEEGTAFVVWKTAEFSKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANDNFRRGGEDLLS 99 
                      9***************************************************************9999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+ks
  Carubv10005408m 100 EIRRRKS 106
                      ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-37698IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-5711104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTAVTAAQRS VPAPFLSKTY QLVDDHNTDD VVSWNEEGTA FVVWKTAEFS KDLLPQYFKH  60
NNFSSFIRQL NTYGFRKTVP DKWEFANDNF RRGGEDLLSE IRRRKSVIAA AGKCVVVGGS  120
PSESNSGGDG GDHGSSSTSS PGSSKNPGSV ENMVADLSGE NEKLKRENNS LSSELAAAKK  180
QRDELVTFLT DHLKVKPEQI EKMIKGGKFK PVESEEGEES DCEGCHGGGE REEEGVGEGL  240
KLFGVWLKGE RKKRGRDEKN YVVAGSHMTE IKNVDFHAPL WKSSKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D3e-24510420129Heat shock factor protein 1
5d5v_B3e-24510420129Heat shock factor protein 1
5d5u_B3e-24510420129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207600.0AY120760.1 Arabidopsis thaliana heat shock transcription factor HSF4 (At4g36990) mRNA, complete cds.
GenBankBT0033690.0BT003369.1 Arabidopsis thaliana heat shock transcription factor HSF4 (At4g36990) mRNA, complete cds.
GenBankY140690.0Y14069.1 Arabidopsis thaliana mRNA for heat shock factor 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284246.10.0hypothetical protein CARUB_v10005408mg
SwissprotQ963201e-167HSFB1_ARATH; Heat stress transcription factor B-1
TrEMBLR0GJT20.0R0GJT2_9BRAS; Uncharacterized protein
STRINGAT4G36990.11e-165(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-139heat shock factor 4